MolNFT v1 · #71028 · protein
Crystal structure of a putative endoribonuclease L-psp from entamoeba histolytica, rhomobohedral form
3M1X: “Crystal structure of a putative endoribonuclease L-psp from entamoeba histolytica, rhomobohedral form”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.42). MolNFT v1 #71028 on GenesisL1: 3D structure, binding sites…
- PDB
- 3M1X
- Type
- protein
- Length
- 126 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative endoribonuclease L-psp
- UniProt
- C4LXT9
- Ligands
- CL
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative endoribonuclease L-psp | protein | 126 | 31% helix, 33% strand | C4LXT9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.42 | 0.79 | 17 | FLC |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 3M1X · Crystal structure of a putative endoribonuclease L-PSP from Entamoeba histolytica… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4LXT9
- Elsewhere: RCSB PDB 3M1X · PDBe 3M1X · UniProt C4LXT9
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