MolNFT v1 · #70953 · protein
Crystal structure of a nelfinavir resistant HIV-1 CRF01_AE protease variant (N88S) in complex with the protease inhibitor darunavir.
3LZU · HIV-1 protease: “Crystal structure of a nelfinavir resistant HIV-1 CRF01_AE protease variant (N88S) in complex with the…”. X-ray diffraction, 1 ligand (017), 1 pocket (best druggability 0.70). MolNFT v1 #70953 on GenesisL1: 3D…
- PDB
- 3LZU
- Type
- protein
- Length
- 198 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 protease
- EC
- 3.4.23.16
- UniProt
- Q9QB59
- Ligands
- 017
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | HIV-1 protease (EC 3.4.23.16) | protein | 99 | 7% helix, 55% strand | Q9QB59 |
Ligands and binding sites
- 017 · (3r,3as,6ar)-hexahydrofuro[2,3-b]furan-3-yl(1s,2r)-3-[[(4-aminophenyl)sulfonyl](isobutyl)amino]-1-benzyl-2-hydroxypropylcarbamate · ligand · chains B, A
- ACT · Acetate ion · additive · 5 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 374 | 0.70 | 0.82 | 35 | 017 |
Interfaces
1 interface between chains.
- B–A · 1847 Ų buried · 40 hydrogen bonds · protein-protein
Compared structures
- 3LZU · Crystal Structure of a Nelfinavir Resistant HIV-1 CRF01_AE Protease variant (N88S) in… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9QB59
- Elsewhere: RCSB PDB 3LZU · PDBe 3LZU · UniProt Q9QB59
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