MolNFT v1 · #70922 · protein

Crystal structure of the pas domain of the protein CPS_1291 from colwellia psychrerythraea. northeast structural genomics consortium target id CSR222B

3LYX · Sensory BOX/GGDEF domain protein: “Crystal structure of the pas domain of the protein CPS_1291 from colwellia psychrerythraea. northeast…”. X-ray diffraction, 3 pockets (best druggability 0.72). MolNFT v1 #70922 on GenesisL1: 3D…

PDB: 3LYX
Type: protein
Length: 238 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sensory BOX/GGDEF domain protein
UniProt: Q486I1
Pockets: 3 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sensory BOX/GGDEF domain protein	protein	118	33% helix, 36% strand	Q486I1
B	Sensory BOX/GGDEF domain protein	protein	120	35% helix, 35% strand	Q486I1

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	262	0.72	0.86	36	empty
2	263	0.72	0.86	33	empty
3	56	0.29	0.75	12	empty

Interfaces

1 interface between chains.

A–B · 1226 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

3LYX · Crystal structure of the PAS domain of the protein CPS_1291 from Colwellia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q486I1
Elsewhere: RCSB PDB 3LYX · PDBe 3LYX · UniProt Q486I1

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