MolNFT v1 · #70912 · protein

Structure of green abalone lysin dimer

3LYN · Sperm lysin: “Structure of green abalone lysin dimer”. X-ray diffraction, 1 pocket (best druggability 0.73). MolNFT v1 #70912 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3LYN
Type: protein
Length: 246 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sperm lysin
UniProt: Q01381
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sperm lysin	protein	122	78% helix, 0% strand	Q01381
B	Sperm lysin	protein	124	73% helix, 0% strand	Q01381

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.73	0.95	22	empty

Interfaces

1 interface between chains.

A–B · 946 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

3LYN · Structure of green abalone lysin dimer · the same entry in another collection · chain A against A, TM-score 1.00
Q01381 · AlphaFold monomer V2.0 prediction for egg-lysin (Q01381) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q01381
Elsewhere: RCSB PDB 3LYN · PDBe 3LYN · UniProt Q01381

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.