MolNFT v1 · #70881 · protein
The crystal structure of a protein in the alkaline phosphatase superfamily from vibrio parahaemolyticus to 1.95A
3LXQ · Uncharacterized protein VP1736: “The crystal structure of a protein in the alkaline phosphatase superfamily from vibrio parahaemolyticus to…”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.82). MolNFT v1 #70881 on…
- PDB
- 3LXQ
- Type
- protein
- Length
- 817 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein VP1736
- UniProt
- Q87NY2
- Ligands
- CL
- Pockets
- 1 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein VP1736 | protein | 409 | 34% helix, 21% strand | Q87NY2 |
| B | Uncharacterized protein VP1736 | protein | 408 | 34% helix, 21% strand | Q87NY2 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1064 | 0.82 | 0.83 | 98 | CL |
Interfaces
1 interface between chains.
- A–B · 477 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 26 modified (engineered).
Compared structures
- 3LXQ · The Crystal Structure of a Protein in the Alkaline Phosphatase Superfamily from Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87NY2
- Elsewhere: RCSB PDB 3LXQ · PDBe 3LXQ · UniProt Q87NY2
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