MolNFT v1 · #70850 · protein

Crystal structure of putative succinylglutamate DESUCCINYLASE/ASPARTOACYLASE (YP_749235.1) from shewanella frigidimarina ncimb 400 at 2.10 a resolution

3LWU: “Crystal structure of putative succinylglutamate DESUCCINYLASE/ASPARTOACYLASE (YP_749235.1) from shewanella…”. X-ray diffraction, 3 ligands (UNL, ZN, SO4), 1 pocket (best druggability 0.61). MolNFT v1 #70850 on GenesisL1: 3D…

PDB: 3LWU
Type: protein
Length: 372 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Succinylglutamate DESUCCINYLASE/ASPARTOACYLASE
UniProt: Q088B8
Ligands: UNL, ZN, SO4
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Succinylglutamate DESUCCINYLASE/ASPARTOACYLASE	protein	372	31% helix, 28% strand	Q088B8

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
ZN · Zinc ion · metal · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	288	0.61	0.79	41	UNL

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3LWU · Crystal structure of Putative succinylglutamate desuccinylase/aspartoacylase… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q088B8
Elsewhere: RCSB PDB 3LWU · PDBe 3LWU · UniProt Q088B8

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