MolNFT v1 · #70501 · protein
Crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum atcc 13032
3LMD: “Crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum atcc 13032”. X-ray diffraction, 3 pockets (best druggability 0.64). MolNFT v1 #70501 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3LMD
- Type
- protein
- Length
- 317 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Geranylgeranyl pyrophosphate synthase
- EC
- 2.5.1.30
- UniProt
- Q8NT37
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Geranylgeranyl pyrophosphate synthase (EC 2.5.1.30) | protein | 317 | 78% helix, 0% strand | Q8NT37 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 458 | 0.64 | 0.77 | 49 | empty |
| 2 | 51 | 0.39 | 0.81 | 14 | empty |
| 3 | 66 | 0.33 | 0.76 | 17 | empty |
Compared structures
- 3LMD · Crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NT37
- Elsewhere: RCSB PDB 3LMD · PDBe 3LMD · UniProt Q8NT37
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