MolNFT v1 · #70500 · protein
Crystal structure of zinc-dependent peptidase from methanocorpusculum labreanum (strain Z), northeast structural genomics consortium target MUR16
3LMC · Peptidase, zinc-dependent: “Crystal structure of zinc-dependent peptidase from methanocorpusculum labreanum (strain Z), northeast…”. X-ray diffraction, 2 ligands (FE, ZN), 1 pocket (best druggability 0.37). MolNFT v1 #70500 on…
- PDB
- 3LMC
- Type
- protein
- Length
- 191 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidase, zinc-dependent
- UniProt
- A2SQK8
- Ligands
- FE, ZN
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidase, zinc-dependent | protein | 191 | 45% helix, 18% strand | A2SQK8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.37 | 0.76 | 15 | ZN |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3LMC · Crystal Structure of zinc-dependent peptidase from Methanocorpusculum labreanum (strain… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2SQK8
- Elsewhere: RCSB PDB 3LMC · PDBe 3LMC · UniProt A2SQK8
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