MolNFT v1 · #70475 · DNA
Comparison between the orthorhombic an tetragonal form of the heptamer sequence D(GCG(XT)GCG)/D(CGCACGC).
3LLN · DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'): “Comparison between the orthorhombic an tetragonal form of the heptamer sequence D(GCG(XT)GCG)/D(CGCACGC).”. X-ray diffraction, 1 ligand (NCO). MolNFT v1 #70475 on GenesisL1: 3D structure…
- PDB
- 3LLN
- Type
- DNA
- Length
- 14 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'); DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3')
- Ligands
- NCO
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3') | dna | 7 | — | — |
| B | DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3') | dna | 7 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 281 Ų buried · 34 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 3LLN · Comparison between the orthorhombic an tetragonal form of the heptamer sequence… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3LLN · PDBe 3LLN
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