MolNFT v1 · #70244 · protein
Crystal structure of fic domain containing ampylator, vops
3LET · Adenosine monophosphate-protein transferase vops: “Crystal structure of fic domain containing ampylator, vops”. X-ray diffraction, 6 pockets (best druggability 0.62). MolNFT v1 #70244 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3LET
- Type
- protein
- Length
- 612 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenosine monophosphate-protein transferase vops
- EC
- 2.7.7.1
- UniProt
- Q87P32
- Pockets
- 6 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenosine monophosphate-protein transferase vops (EC 2.7.7.1) | protein | 302 | 69% helix, 0% strand | Q87P32 |
| B | Adenosine monophosphate-protein transferase vops (EC 2.7.7.1) | protein | 310 | 68% helix, 1% strand | Q87P32 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 484 | 0.62 | 0.75 | 56 | empty |
| 2 | 70 | 0.52 | 0.86 | 15 | empty |
| 3 | 195 | 0.45 | 0.74 | 29 | empty |
| 4 | 137 | 0.41 | 0.75 | 23 | empty |
| 5 | 167 | 0.41 | 0.73 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 555 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3LET · Crystal Structure of Fic domain containing AMPylator, VopS · the same entry in another collection · chain A against A, TM-score 1.00
- Q87P32 · AlphaFold monomer V2.0 prediction for protein adenylyltransferase vops (Q87P32) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87P32
- Elsewhere: RCSB PDB 3LET · PDBe 3LET · UniProt Q87P32
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