MolNFT v1 · #70196 · protein
Crystal structure of SMU.776, a putative methyltransferase complexed with sah
3LDF · Putative uncharacterized protein SMU.776: “Crystal structure of SMU.776, a putative methyltransferase complexed with sah”. X-ray diffraction, 1 ligand (SAH), 2 pockets (best druggability 0.77). MolNFT v1 #70196 on GenesisL1: 3D…
- PDB
- 3LDF
- Type
- protein
- Length
- 380 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein SMU.776
- UniProt
- Q8DUW5
- Ligands
- SAH
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein SMU.776 | protein | 380 | 32% helix, 32% strand | Q8DUW5 |
Ligands and binding sites
- SAH · S-adenosyl-L-homocysteine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 866 | 0.77 | 0.80 | 74 | SAH |
| 2 | 93 | 0.35 | 0.74 | 19 | empty |
Compared structures
- 3LDF · Crystal structure of SMU.776, a putative methyltransferase complexed with SAH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DUW5
- Elsewhere: RCSB PDB 3LDF · PDBe 3LDF · UniProt Q8DUW5
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