MolNFT v1 · #6986 · protein

Reduced state of cytochrome C554 from nitrosomonas europaea

1FT6: “Reduced state of cytochrome C554 from nitrosomonas europaea”. X-ray diffraction, 4 ligands (HEC, DTN, SO3), 1 pocket (best druggability 0.84). MolNFT v1 #6986 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1FT6
Type: protein
Length: 208 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C554
UniProt: Q57142
Ligands: HEC, DTN, SO3, PO4
Pockets: 1 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C554	protein	208	38% helix, 4% strand	Q57142

Ligands and binding sites

HEC · Heme C · ligand · 4 copies · chains A
DTN · Dithionite · ligand · chains A
SO3 · Sulfite ion · ion · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1187	0.84	0.85	103	HEC, DTN

Modifications

Observed in the structure: 8 cofactor (heme c attachment).

Compared structures

1FT6 · Reduced state of cytochrome C554 from nitrosomonas europaea · the same entry in another collection · chain A against A, TM-score 1.00
Q57142 · AlphaFold monomer V2.0 prediction for cytochrome C-554 (Q57142) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q57142
Elsewhere: RCSB PDB 1FT6 · PDBe 1FT6 · UniProt Q57142

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