MolNFT v1 · #69785 · RNA
The crystal structure of unmodified trnaphe from escherichia COLI
3L0U: “The crystal structure of unmodified trnaphe from escherichia COLI”. X-ray diffraction, 2 ligands (MG, K), 3 pockets (best druggability 0.59). MolNFT v1 #69785 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3L0U
- Type
- RNA
- Length
- 73 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Unmodified trnaphe
- Ligands
- MG, K
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Unmodified trnaphe | rna | 73 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 566 | 0.59 | 0.74 | 30 | empty |
| 2 | 332 | 0.53 | 0.75 | 24 | K |
| 3 | 70 | 0.29 | 0.74 | 12 | empty |
Compared structures
- 3L0U · The crystal structure of unmodified tRNAPhe from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3L0U · PDBe 3L0U
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