MolNFT v1 · #69649 · protein
Crystal structure of putative methyltransferase from lactobacillus brevis
3KWP · Predicted methyltransferase: “Crystal structure of putative methyltransferase from lactobacillus brevis”. X-ray diffraction, 1 pocket (best druggability 0.54). MolNFT v1 #69649 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3KWP
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted methyltransferase
- UniProt
- Q03SR9
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted methyltransferase | protein | 228 | 39% helix, 22% strand | Q03SR9 |
Ligands and binding sites
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.54 | 0.78 | 34 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3KWP · Crystal structure of putative methyltransferase from Lactobacillus brevis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03SR9
- Elsewhere: RCSB PDB 3KWP · PDBe 3KWP · UniProt Q03SR9
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