MolNFT v1 · #69266 · protein

Crystal structure of putative flavoprotein in complex with FMN (YP_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a resolution

3KLB: “Crystal structure of putative flavoprotein in complex with FMN (YP_213683.1) from bacteroides fragilis nctc…”. X-ray diffraction, 2 ligands (FMN, NA), 1 pocket (best druggability 0.52). MolNFT v1 #69266 on GenesisL1: 3D structure…

PDB: 3KLB
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative flavoprotein
UniProt: Q5L808
Ligands: FMN, NA
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative flavoprotein	protein	162	35% helix, 19% strand	Q5L808

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
NA · Sodium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 10 copies · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	181	0.52	0.78	21	FMN

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

3KLB · Crystal structure of Putative Flavoprotein in Complex with FMN (YP_213683.1) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5L808
Elsewhere: RCSB PDB 3KLB · PDBe 3KLB · UniProt Q5L808

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