MolNFT v1 · #69228 · protein
Camkii substrate complex a
3KK8 · CALCIUM/CALMODULIN dependent protein kinase II: “Camkii substrate complex a”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.63). MolNFT v1 #69228 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3KK8
- Type
- protein
- Length
- 284 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CALCIUM/CALMODULIN dependent protein kinase II
- UniProt
- Q9U6Q0
- Ligands
- MG
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CALCIUM/CALMODULIN dependent protein kinase II | protein | 284 | 37% helix, 18% strand | Q9U6Q0 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 379 | 0.63 | 0.78 | 35 | empty |
| 2 | 88 | 0.47 | 0.81 | 18 | empty |
| 3 | 71 | 0.28 | 0.72 | 13 | empty |
Modifications
Observed in the structure: 1 modified (phosphorylation).
Compared structures
- 3KK8 · CaMKII Substrate Complex A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9U6Q0
- Elsewhere: RCSB PDB 3KK8 · PDBe 3KK8 · UniProt Q9U6Q0
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