MolNFT v1 · #69155 · protein

Crystal structure of putative motb like protein DVU_2228 from desulfovibrio vulgaris.

3KHN · Motb protein, putative: “Crystal structure of putative motb like protein DVU_2228 from desulfovibrio vulgaris.”. X-ray diffraction, 3 pockets (best druggability 0.64). MolNFT v1 #69155 on GenesisL1: 3D structure, binding sites and…

PDB: 3KHN
Type: protein
Length: 319 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Motb protein, putative
UniProt: Q729W9
Pockets: 3 · best druggability 0.64

Structure

x-ray diffraction · 2 distinct chains · 43% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Motb protein, putative	protein	162	42% helix, 22% strand	Q729W9
B	Motb protein, putative	protein	157	45% helix, 22% strand	Q729W9

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	468	0.64	0.77	57	empty
2	110	0.42	0.77	21	empty
3	85	0.38	0.77	20	empty

Interfaces

1 interface between chains.

A–B · 1313 Å² buried · 24 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

3KHN · Crystal structure of putative MotB like protein DVU_2228 from Desulfovibrio vulgaris. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q729W9
Elsewhere: RCSB PDB 3KHN · PDBe 3KHN · UniProt Q729W9

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