MolNFT v1 · #6905 · protein
Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase
1FQT · Rieske-type ferredoxin of biphenyl dioxygenase: “Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase”. X-ray diffraction, 1 ligand (FES), 2 pockets (best druggability 0.38). MolNFT v1 #6905 on…
- PDB
- 1FQT
- Type
- protein
- Length
- 218 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rieske-type ferredoxin of biphenyl dioxygenase
- EC
- 1.14.12.-
- UniProt
- P37332
- Ligands
- FES
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rieske-type ferredoxin of biphenyl dioxygenase (EC 1.14.12.-) | protein | 109 | 3% helix, 44% strand | P37332 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.38 | 0.76 | 15 | GOL |
| 2 | 66 | 0.30 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 375 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 1FQT · Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase · the same entry in another collection · chain A against A, TM-score 1.00
- P37332 · AlphaFold monomer V2.0 prediction for biphenyl dioxygenase system ferredoxin subunit… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37332
- Elsewhere: RCSB PDB 1FQT · PDBe 1FQT · UniProt P37332
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