MolNFT v1 · #68933 · protein

Flavodoxin from desulfovibrio desulfuricans atcc 27774 (oxidized form)

3KAP: “Flavodoxin from desulfovibrio desulfuricans atcc 27774 (oxidized form)”. X-ray diffraction, 1 ligand (FMN), 1 pocket (best druggability 0.47). MolNFT v1 #68933 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3KAP
Type: protein
Length: 147 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flavodoxin
UniProt: P80312
Ligands: FMN
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flavodoxin	protein	147	37% helix, 24% strand	P80312

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.47	0.82	24	FMN

Compared structures

3KAP · Flavodoxin from Desulfovibrio desulfuricans ATCC 27774 (oxidized form) · the same entry in another collection · chain A against A, TM-score 1.00
P80312 · AlphaFold monomer V2.0 prediction for flavodoxin (P80312) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P80312
Elsewhere: RCSB PDB 3KAP · PDBe 3KAP · UniProt P80312

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