MolNFT v1 · #68667 · protein
Crystal structure of protein LP_0118 from lactobacillus PLANTARUM,NORTHEAST structural genomics consortium target LPR91B
3K2Y · Uncharacterized protein LP_0118: “Crystal structure of protein LP_0118 from lactobacillus PLANTARUM,NORTHEAST structural genomics consortium…”. X-ray diffraction, 4 pockets (best druggability 0.73). MolNFT v1 #68667 on GenesisL1: 3D…
- PDB
- 3K2Y
- Type
- protein
- Length
- 409 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein LP_0118
- UniProt
- Q890B7
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 4 distinct chains · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein LP_0118 | protein | 103 | 18% helix, 41% strand | Q890B7 |
| B | Uncharacterized protein LP_0118 | protein | 103 | 18% helix, 43% strand | Q890B7 |
| C | Uncharacterized protein LP_0118 | protein | 102 | 18% helix, 44% strand | Q890B7 |
| D | Uncharacterized protein LP_0118 | protein | 101 | 21% helix, 45% strand | Q890B7 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1141 | 0.73 | 0.77 | 97 | empty |
| 2 | 184 | 0.57 | 0.81 | 17 | empty |
| 3 | 228 | 0.50 | 0.75 | 27 | empty |
| 4 | 53 | 0.28 | 0.74 | 16 | empty |
Interfaces
5 interfaces between chains.
- B–D · 593 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 572 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 443 Ų buried · 11 hydrogen bonds · protein-protein
- A–D · 130 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 41 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3K2Y · Crystal structure of protein lp_0118 from Lactobacillus plantarum,northeast structural… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q890B7
- Elsewhere: RCSB PDB 3K2Y · PDBe 3K2Y · UniProt Q890B7
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