MolNFT v1 · #68553 · protein

Structure of eed in apo form

3JZN · Polycomb protein eed: “Structure of eed in apo form”. X-ray diffraction, 3 pockets (best druggability 0.76). MolNFT v1 #68553 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3JZN
Type: protein
Length: 358 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polycomb protein eed
UniProt: O75530
Pockets: 3 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polycomb protein eed	protein	358	6% helix, 46% strand	O75530

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	413	0.76	0.85	43	empty
2	94	0.37	0.75	18	empty
3	56	0.31	0.75	13	empty

Compared structures

3JZN · Structure of EED in apo form · the same entry in another collection · chain A against A, TM-score 1.00
O75530 · AlphaFold monomer V2.0 prediction for polycomb protein eed (O75530) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O75530
Elsewhere: RCSB PDB 3JZN · PDBe 3JZN · UniProt O75530

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