MolNFT v1 · #68406 · protein
Structure of the translocation ATPase seca from thermotoga maritima
3JUX · Protein translocase subunit seca: “Structure of the translocation ATPase seca from thermotoga maritima”. X-ray diffraction, 2 ligands (ADP, MG), 8 pockets (best druggability 0.83). MolNFT v1 #68406 on GenesisL1: 3D structure…
- PDB
- 3JUX
- Type
- protein
- Length
- 813 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein translocase subunit seca
- UniProt
- Q9X1R4
- Ligands
- ADP, MG
- Pockets
- 8 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein translocase subunit seca | protein | 813 | 54% helix, 12% strand | Q9X1R4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 828 | 0.83 | 0.86 | 58 | empty |
| 2 | 511 | 0.71 | 0.81 | 62 | MG, ADP |
| 3 | 57 | 0.70 | 0.97 | 17 | empty |
| 4 | 181 | 0.64 | 0.85 | 29 | empty |
| 5 | 171 | 0.52 | 0.79 | 28 | empty |
Compared structures
- 3JUX · Structure of the translocation ATPase SecA from Thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
- Q9X1R4 · AlphaFold monomer V2.0 prediction for protein translocase subunit seca (Q9X1R4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1R4
- Elsewhere: RCSB PDB 3JUX · PDBe 3JUX · UniProt Q9X1R4
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