MolNFT v1 · #6834 · RNA
Pentameric model of the bacteriophage PHI29 prohead RNA
1FOQ: “Pentameric model of the bacteriophage PHI29 prohead RNA”. Electron microscopy, 19 pockets (best druggability 0.65). MolNFT v1 #6834 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1FOQ
- Type
- RNA
- Length
- 545 nucleotides
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacteriophage PHI29 prohead RNA
- Pockets
- 19 · best druggability 0.65
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | Bacteriophage PHI29 prohead RNA | rna | 109 | — | — |
Pockets
19 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 981 | 0.65 | 0.73 | 53 | empty |
| 2 | 854 | 0.63 | 0.73 | 48 | empty |
| 3 | 703 | 0.60 | 0.72 | 43 | empty |
| 4 | 493 | 0.55 | 0.73 | 31 | empty |
| 5 | 462 | 0.54 | 0.73 | 26 | empty |
Interfaces
5 interfaces between chains.
- A–E · 272 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- A–B · 264 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- B–C · 252 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- D–E · 245 Ų buried · 22 hydrogen bonds · nucleic-nucleic
- C–D · 238 Ų buried · 28 hydrogen bonds · nucleic-nucleic
Compared structures
- 1FOQ · Pentameric model of the bacteriophage PHI29 prohead RNA · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1FOQ · PDBe 1FOQ
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