MolNFT v1 · #68094 · protein
Full virus MAP of brome mosaic virus
3J7L · Capsid protein: “Full virus MAP of brome mosaic virus”. Electron microscopy, 8 pockets (best druggability 0.59). MolNFT v1 #68094 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3J7L
- Type
- protein
- Length
- 477 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- P03602
- Pockets
- 8 · best druggability 0.59
Structure
electron microscopy · 2 distinct chains · 12% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 149 | 9% helix, 30% strand | P03602 |
| B, C | Capsid protein | protein | 164 | 14% helix, 29% strand | P03602 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 465 | 0.59 | 0.75 | 54 | empty |
| 2 | 202 | 0.56 | 0.79 | 25 | empty |
| 3 | 198 | 0.51 | 0.77 | 41 | empty |
| 4 | 134 | 0.45 | 0.77 | 24 | empty |
| 5 | 80 | 0.44 | 0.80 | 13 | empty |
Interfaces
3 interfaces between chains.
- A–C · 586 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 532 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 532 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3J7L · Full virus map of brome mosaic virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03602
- Elsewhere: RCSB PDB 3J7L · PDBe 3J7L · UniProt P03602
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