MolNFT v1 · #68004 · RNA
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of rimm
3J2E · 16S rRNA: “Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of rimm”. Electron microscopy, 20 pockets (best druggability 0.83). MolNFT v1 #68004 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3J2E
- Type
- RNA
- Length
- 1,533 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 16S rRNA
- Pockets
- 20 · best druggability 0.83
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | 16S rRNA | rna | 1533 | — | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1042 | 0.83 | 0.85 | 77 | empty |
| 2 | 992 | 0.76 | 0.80 | 45 | empty |
| 3 | 163 | 0.76 | 0.94 | 20 | empty |
| 4 | 193 | 0.76 | 0.93 | 21 | empty |
| 5 | 834 | 0.71 | 0.78 | 48 | empty |
Compared structures
- 3J2E · Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3J2E · PDBe 3J2E
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