MolNFT v1 · #67990 · protein
A refined model of the prototypical salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
3J1X · Protein prgh: “A refined model of the prototypical salmonella typhimurium T3SS basal body reveals the molecular basis for…”. Electron microscopy, 20 pockets (best druggability 0.67). MolNFT v1 #67990 on GenesisL1: 3D structure…
- PDB
- 3J1X
- Type
- protein
- Length
- 4,584 residues
- Chains
- 24
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein prgh
- UniProt
- P41783
- Pockets
- 20 · best druggability 0.67
Structure
electron microscopy · 1 distinct chain · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X | Protein prgh | protein | 191 | 38% helix, 24% strand | P41783 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 782 | 0.67 | 0.75 | 82 | empty |
| 2 | 710 | 0.66 | 0.75 | 70 | empty |
| 3 | 706 | 0.66 | 0.75 | 70 | empty |
| 4 | 672 | 0.65 | 0.75 | 69 | empty |
| 5 | 653 | 0.64 | 0.74 | 66 | empty |
Interfaces
24 interfaces between chains.
- A–X · 331 Ų buried · 3 hydrogen bonds · protein-protein
- M–N · 329 Ų buried · 3 hydrogen bonds · protein-protein
- V–W · 329 Ų buried · 3 hydrogen bonds · protein-protein
- O–P · 328 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 328 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3J1X · A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41783
- Elsewhere: RCSB PDB 3J1X · PDBe 3J1X · UniProt P41783
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