MolNFT v1 · #67956 · protein
Cryo-EM reconstruction of west nile virus
3J0B · Envelope glycoprotein E: “Cryo-EM reconstruction of west nile virus”. Electron microscopy, 3 pockets (best druggability 0.43). MolNFT v1 #67956 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3J0B
- Type
- protein
- Length
- 1,185 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope glycoprotein E
- UniProt
- Q9Q6P4
- Pockets
- 3 · best druggability 0.43
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Envelope glycoprotein E | protein | 395 | 0% helix, 0% strand | Q9Q6P4 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.43 | 0.73 | 39 | empty |
| 2 | 68 | 0.31 | 0.72 | 23 | empty |
| 3 | 63 | 0.30 | 0.72 | 16 | empty |
Interfaces
3 interfaces between chains.
- B–C · 134 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 65 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 11 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3J0B · cryo-EM reconstruction of West Nile virus · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Q6P4
- Elsewhere: RCSB PDB 3J0B · PDBe 3J0B · UniProt Q9Q6P4
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