MolNFT v1 · #67916 · protein
Backbone trace of the capsid protein dimer of a fungal partitivirus from electron cryomicroscopy and homology modeling
3IYM: “Backbone trace of the capsid protein dimer of a fungal partitivirus from electron cryomicroscopy and homology…”. Electron microscopy, 10 pockets (best druggability 0.65). MolNFT v1 #67916 on GenesisL1: 3D structure, binding sites…
- PDB
- 3IYM
- Type
- protein
- Length
- 792 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- Q6YDQ6
- Pockets
- 10 · best druggability 0.65
Structure
electron microscopy · 1 distinct chain · 33% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Capsid protein | protein | 396 | 33% helix, 3% strand | Q6YDQ6 |
Pockets
10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 615 | 0.65 | 0.76 | 90 | empty |
| 2 | 565 | 0.63 | 0.76 | 89 | empty |
| 3 | 280 | 0.49 | 0.74 | 49 | empty |
| 4 | 177 | 0.46 | 0.76 | 41 | empty |
| 5 | 148 | 0.42 | 0.75 | 41 | empty |
Interfaces
1 interface between chains.
- A–B · 1144 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 3IYM · Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6YDQ6
- Elsewhere: RCSB PDB 3IYM · PDBe 3IYM · UniProt Q6YDQ6
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