MolNFT v1 · #67902 · protein

Variable domains of the computer generated model (wam) of Fab F fitted into the cryoem reconstruction of the virus-Fab F complex

3IY7 · Fragment from neutralizing antibody F (light chain): “Variable domains of the computer generated model (wam) of Fab F fitted into the cryoem reconstruction of the…”. Electron microscopy, 1 pocket (best druggability 0.30). MolNFT v1…

PDB: 3IY7
Type: protein
Length: 221 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fragment from neutralizing antibody F (light chain); Fragment from neutralizing antibody…
Pockets: 1 · best druggability 0.30

Structure

electron microscopy · 2 distinct chains · 4% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fragment from neutralizing antibody F (light chain)	protein	106	3% helix, 53% strand	—
B	Fragment from neutralizing antibody F (heavy chain)	protein	115	5% helix, 46% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.30	0.74	19	empty

Interfaces

1 interface between chains.

A–B · 855 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3IY7 · Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3IY7 · PDBe 3IY7

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