MolNFT v1 · #67897 · protein

Variable domains of the computer generated model (wam) of Fab 6 fitted into the cryoem reconstruction of the virus-Fab 6 complex

3IY2 · Antibody 6, light chain: “Variable domains of the computer generated model (wam) of Fab 6 fitted into the cryoem reconstruction of the…”. Electron microscopy, 1 pocket (best druggability 0.25). MolNFT v1 #67897 on GenesisL1: 3D…

PDB: 3IY2
Type: protein
Length: 218 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Antibody 6, light chain; Antibody 6, heavy chain
Pockets: 1 · best druggability 0.25

Structure

electron microscopy · 2 distinct chains · 4% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Antibody 6, light chain	protein	107	3% helix, 51% strand	—
B	Antibody 6, heavy chain	protein	111	5% helix, 50% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.25	0.74	18	empty

Interfaces

1 interface between chains.

A–B · 859 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

3IY2 · Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3IY2 · PDBe 3IY2

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