MolNFT v1 · #67817 · RNA
Structure of the U65C mutant a-riboswitch aptamer from the bacillus subtilis pbue operon
3IVN: “Structure of the U65C mutant a-riboswitch aptamer from the bacillus subtilis pbue operon”. X-ray diffraction, 2 ligands (MG, BR), 4 pockets (best druggability 0.67). MolNFT v1 #67817 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3IVN
- Type
- RNA
- Length
- 138 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- A-riboswitch
- Ligands
- MG, BR
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | A-riboswitch | rna | 69 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1027 | 0.67 | 0.74 | 40 | MG |
| 2 | 691 | 0.65 | 0.75 | 51 | MG |
| 3 | 269 | 0.46 | 0.73 | 20 | empty |
| 4 | 191 | 0.40 | 0.72 | 19 | MG |
Compared structures
- 3IVN · Structure of the U65C mutant A-riboswitch aptamer from the Bacillus subtilis pbuE operon · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3IVN · PDBe 3IVN
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