MolNFT v1 · #67795 · protein
Crystal structure of susd homolog (NP_809186.1) from bacteroides thetaiotaomicron vpi-5482 at 1.35 a resolution
3IV0: “Crystal structure of susd homolog (NP_809186.1) from bacteroides thetaiotaomicron vpi-5482 at 1.35 a…”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.46). MolNFT v1 #67795 on GenesisL1: 3D structure, binding sites…
- PDB
- 3IV0
- Type
- protein
- Length
- 466 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd homolog
- UniProt
- Q8AB38
- Ligands
- CL
- Pockets
- 4 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd homolog | protein | 466 | 52% helix, 7% strand | Q8AB38 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.46 | 0.81 | 18 | empty |
| 2 | 104 | 0.45 | 0.78 | 24 | empty |
| 3 | 66 | 0.32 | 0.75 | 20 | empty |
| 4 | 51 | 0.28 | 0.75 | 16 | EDO |
Modifications
Observed in the structure: 18 modified (engineered, oxidation).
Compared structures
- 3IV0 · Crystal structure of SusD homolog (NP_809186.1) from BACTEROIDES THETAIOTAOMICRON… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8AB38
- Elsewhere: RCSB PDB 3IV0 · PDBe 3IV0 · UniProt Q8AB38
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