MolNFT v1 · #67654 · RNA
SAM-I riboswitch from T. tencongensis variant A94G bound with SAM
3IQR: “SAM-I riboswitch from T. tencongensis variant A94G bound with SAM”. X-ray diffraction, 2 ligands (SAM, BA), 3 pockets (best druggability 0.74). MolNFT v1 #67654 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3IQR
- Type
- RNA
- Length
- 94 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SAM-I riboswitch
- Ligands
- SAM, BA
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SAM-I riboswitch | rna | 94 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1018 | 0.74 | 0.78 | 42 | BA, SAM |
| 2 | 620 | 0.64 | 0.76 | 35 | BA |
| 3 | 93 | 0.31 | 0.73 | 9 | BA |
Compared structures
- 3IQR · SAM-I riboswitch from T. tencongensis variant A94G bound with SAM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3IQR · PDBe 3IQR
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