MolNFT v1 · #67567 · protein

Crystal structure of a dimeric form of the uvsx recombinase core domain from enterobacteria phage T4

3IO5 · Recombination and repair protein: “Crystal structure of a dimeric form of the uvsx recombinase core domain from enterobacteria phage T4”. X-ray diffraction, 1 ligand (PO4), 4 pockets (best druggability 0.67). MolNFT v1 #67567 on…

PDB: 3IO5
Type: protein
Length: 543 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Recombination and repair protein
UniProt: P04529
Ligands: PO4
Pockets: 4 · best druggability 0.67

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Recombination and repair protein	protein	271	36% helix, 28% strand	P04529
B	Recombination and repair protein	protein	272	36% helix, 26% strand	P04529

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	587	0.67	0.77	62	empty
2	176	0.54	0.80	34	PO4
3	178	0.52	0.78	33	PO4
4	50	0.27	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 889 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

3IO5 · Crystal Structure of a dimeric form of the uvsX Recombinase core domain from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04529
Elsewhere: RCSB PDB 3IO5 · PDBe 3IO5 · UniProt P04529

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