MolNFT v1 · #67512 · protein
Crystal structure of putative molybdenum carrier protein (YP_461806.1) from syntrophus aciditrophicus sb at 1.45 a resolution
3IMK: “Crystal structure of putative molybdenum carrier protein (YP_461806.1) from syntrophus aciditrophicus sb at…”. X-ray diffraction, 1 pocket (best druggability 0.54). MolNFT v1 #67512 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3IMK
- Type
- protein
- Length
- 158 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative molybdenum carrier protein
- UniProt
- Q2LU76
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative molybdenum carrier protein | protein | 158 | 40% helix, 16% strand | Q2LU76 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
- PG4 · Tetraethylene glycol · additive · chains A
- PG6 · 1-(2-methoxy-ethoxy)-2-{2-[2-(2-methoxy-ethoxy]-ethoxy}-ethane · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 154 | 0.54 | 0.80 | 28 | GOL |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3IMK · Crystal structure of Putative molybdenum carrier protein (YP_461806.1) from SYNTROPHUS… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2LU76
- Elsewhere: RCSB PDB 3IMK · PDBe 3IMK · UniProt Q2LU76
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