MolNFT v1 · #67443 · protein

Crystal structure analysis of msp domain

3IKK · Vesicle-associated membrane protein-associated protein B/C: “Crystal structure analysis of msp domain”. X-ray diffraction, 1 pocket (best druggability 0.31). MolNFT v1 #67443 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3IKK
Type: protein
Length: 250 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Vesicle-associated membrane protein-associated protein B/C
UniProt: O95292
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Vesicle-associated membrane protein-associated protein B/C	protein	125	0% helix, 45% strand	O95292

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.31	0.76	17	empty

Interfaces

1 interface between chains.

A–B · 490 Å² buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3IKK · Crystal structure analysis of msp domain · the same entry in another collection · chain A against A, TM-score 1.00
O95292 · AlphaFold monomer V2.0 prediction for vesicle-associated membrane protein-associated… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O95292
Elsewhere: RCSB PDB 3IKK · PDBe 3IKK · UniProt O95292

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