MolNFT v1 · #67313 · protein
The crystal structure of ribosomal-protein-S5-alanine acetyltransferase from vibrio fischeri to 2.0A
3IGR · Ribosomal-protein-S5-alanine N-acetyltransferase: “The crystal structure of ribosomal-protein-S5-alanine acetyltransferase from vibrio fischeri to 2.0A”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability 0.72). MolNFT…
- PDB
- 3IGR
- Type
- protein
- Length
- 366 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal-protein-S5-alanine N-acetyltransferase
- EC
- 2.3.1.128
- UniProt
- Q5DZH6
- Ligands
- NA
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ribosomal-protein-S5-alanine N-acetyltransferase (EC 2.3.1.128) | protein | 183 | 35% helix, 36% strand | Q5DZH6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 576 | 0.72 | 0.80 | 57 | empty |
| 2 | 498 | 0.72 | 0.81 | 61 | NA, GOL |
| 3 | 118 | 0.36 | 0.73 | 21 | NA |
Interfaces
1 interface between chains.
- A–B · 243 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3IGR · The Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5DZH6
- Elsewhere: RCSB PDB 3IGR · PDBe 3IGR · UniProt Q5DZH6
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