MolNFT v1 · #67299 · protein
Crystal structure of mtu reca intein, splicing domain
3IGD · Endonuclease pi-mtui: “Crystal structure of mtu reca intein, splicing domain”. X-ray diffraction, 2 ligands (SNN, ZN), 1 pocket (best druggability 0.33). MolNFT v1 #67299 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3IGD
- Type
- protein
- Length
- 138 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endonuclease pi-mtui
- EC
- 3.1.-.-
- UniProt
- P0A5U4
- Ligands
- SNN, ZN
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endonuclease pi-mtui (EC 3.1.-.-) | protein | 138 | 7% helix, 51% strand | P0A5U4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.33 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 3IGD · Crystal structure of Mtu recA intein, splicing domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A5U4
- Elsewhere: RCSB PDB 3IGD · PDBe 3IGD · UniProt P0A5U4
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