MolNFT v1 · #67267 · protein
1.55 ångström resolution crystal structure of peptidase T (pept-1) from bacillus anthracis str. 'ames ancestor'.
3IFE: “1.55 ångström resolution crystal structure of peptidase T (pept-1) from bacillus anthracis str. 'ames…”. X-ray diffraction, 5 ligands (GLC, FRU, ZN). MolNFT v1 #67267 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3IFE
- Type
- protein
- Length
- 416 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidase T
- EC
- 3.4.11.4
- UniProt
- Q81WU4
- Ligands
- GLC, FRU, ZN, NA, SO4
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidase T (EC 3.4.11.4) | protein | 416 | 37% helix, 23% strand | Q81WU4 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- FRU · beta-D-fructofuranose · sugar · 2 copies · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 3IFE · 1.55 Angstrom Resolution Crystal Structure of Peptidase T (pepT-1) from Bacillus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q81WU4 · AlphaFold monomer V2.0 prediction for peptidase T (Q81WU4) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81WU4
- Elsewhere: RCSB PDB 3IFE · PDBe 3IFE · UniProt Q81WU4
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