MolNFT v1 · #67266 · protein

Human synthetic monocyte chemoattractant protein 1 (mcp-1)

3IFD · C-C motif chemokine 2: “Human synthetic monocyte chemoattractant protein 1 (mcp-1)”. X-ray diffraction, 2 ligands (K, PO4). MolNFT v1 #67266 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3IFD
Type: protein
Length: 66 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-C motif chemokine 2
UniProt: P13500
Ligands: K, PO4

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C-C motif chemokine 2	protein	66	18% helix, 26% strand	P13500

Ligands and binding sites

K · Potassium ion · metal · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3IFD · Human synthetic monocyte chemoattractant protein 1 (MCP-1) · the same entry in another collection · chain A against A, TM-score 1.00
P13500 · AlphaFold monomer V2.0 prediction for C-C motif chemokine 2 (P13500) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13500
Elsewhere: RCSB PDB 3IFD · PDBe 3IFD · UniProt P13500

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