MolNFT v1 · #67216 · protein

Crystal structure of the A0A fragment of ERP72

3IDV · Protein disulfide-isomerase A4: “Crystal structure of the A0A fragment of ERP72”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best druggability 0.63). MolNFT v1 #67216 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3IDV
Type: protein
Length: 235 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein disulfide-isomerase A4
EC: 5.3.4.1
UniProt: P13667
Ligands: ZN, CL
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein disulfide-isomerase A4 (EC 5.3.4.1)	protein	235	34% helix, 23% strand	P13667

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	417	0.63	0.77	30	empty

Compared structures

3IDV · Crystal structure of the a0a fragment of ERp72 · the same entry in another collection · chain A against A, TM-score 1.00
P13667 · AlphaFold monomer V2.0 prediction for protein disulfide-isomerase A4 (P13667) · a predicted model of the same protein · chain A against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13667
Elsewhere: RCSB PDB 3IDV · PDBe 3IDV · UniProt P13667

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