MolNFT v1 · #67215 · protein
Crystal structure of the cardb domain of the PF1109 protein in complex with di-metal ions from pyrococcus furiosus, northeast structural genomics consortium target PFR193A
3IDU · Uncharacterized protein: “Crystal structure of the cardb domain of the PF1109 protein in complex with di-metal ions from pyrococcus…”. X-ray diffraction, 1 ligand (MN), 2 pockets (best druggability 0.54). MolNFT v1 #67215 on…
- PDB
- 3IDU
- Type
- protein
- Length
- 226 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q8U1U6
- Ligands
- MN
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 116 | 0% helix, 55% strand | Q8U1U6 |
| B | Uncharacterized protein | protein | 110 | 0% helix, 59% strand | Q8U1U6 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 311 | 0.54 | 0.75 | 38 | empty |
| 2 | 60 | 0.24 | 0.71 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 91 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 3IDU · Crystal Structure of the CARDB domain of the PF1109 protein in complex with di-metal ions… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U1U6
- Elsewhere: RCSB PDB 3IDU · PDBe 3IDU · UniProt Q8U1U6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.