MolNFT v1 · #67042 · protein

A domain of a functionally unknown protein from methanocaldococcus jannaschii dsm 2661.

3I8O · Kh domain-containing protein MJ1533: “A domain of a functionally unknown protein from methanocaldococcus jannaschii dsm 2661.”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #67042 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 3I8O
Type: protein
Length: 140 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kh domain-containing protein MJ1533
UniProt: Q58928
Ligands: CL

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kh domain-containing protein MJ1533	protein	140	48% helix, 14% strand	Q58928

Ligands and binding sites

CL · Chloride ion · ion · chains A
FMT · Formic acid · additive · 3 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

3I8O · A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661. · the same entry in another collection · chain A against A, TM-score 1.00
Q58928 · AlphaFold monomer V2.0 prediction for uncharacterized kh and pin- domain containing… · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58928
Elsewhere: RCSB PDB 3I8O · PDBe 3I8O · UniProt Q58928

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