MolNFT v1 · #66999 · protein
35/99/170/186/220-loops of fxa in sgt
3I78 · Trypsin: “35/99/170/186/220-loops of fxa in sgt”. X-ray diffraction, 3 ligands (BEN, NA, SO4), 1 pocket (best druggability 0.42). MolNFT v1 #66999 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3I78
- Type
- protein
- Length
- 229 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trypsin
- EC
- 3.4.21.4
- UniProt
- P00775
- Ligands
- BEN, NA, SO4
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trypsin (EC 3.4.21.4) | protein | 229 | 10% helix, 39% strand | P00775 |
Ligands and binding sites
- BEN · Benzamidine · ligand · chains A
- NA · Sodium ion · metal · chains A
- SO4 · Sulfate ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.42 | 0.76 | 29 | BEN, SO4 |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00775
- Elsewhere: RCSB PDB 3I78 · PDBe 3I78 · UniProt P00775
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.