MolNFT v1 · #66986 · protein

Crystal structure of a periplasmic HIS/GLU/GLN/ARG/OPINE family- binding protein from silicibacter pomeroyi in complex with lysine

3I6V · Periplasmic HIS/GLU/GLN/ARG/OPINE family-binding protein: “Crystal structure of a periplasmic HIS/GLU/GLN/ARG/OPINE family- binding protein from silicibacter pomeroyi…”. X-ray diffraction, 2 ligands (LYS, NA), 1 pocket (best…

PDB: 3I6V
Type: protein
Length: 218 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic HIS/GLU/GLN/ARG/OPINE family-binding protein
UniProt: Q5LTV6
Ligands: LYS, NA
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic HIS/GLU/GLN/ARG/OPINE family-binding protein	protein	218	36% helix, 28% strand	Q5LTV6

Ligands and binding sites

LYS · Lysine · ligand · chains A
NA · Sodium ion · metal · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.75	0.98	32	LYS

Compared structures

3I6V · Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LTV6
Elsewhere: RCSB PDB 3I6V · PDBe 3I6V · UniProt Q5LTV6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.