MolNFT v1 · #66910 · protein

Structure of a putative inorganic pyrophosphatase from the oil- degrading bacterium oleispira antarctica

3I4Q · APC40078: “Structure of a putative inorganic pyrophosphatase from the oil- degrading bacterium oleispira antarctica”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.53). MolNFT v1 #66910 on GenesisL1: 3D structure…

PDB: 3I4Q
Type: protein
Length: 170 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: APC40078
EC: 3.6.1.1
Ligands: NA
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	APC40078 (EC 3.6.1.1)	protein	170	18% helix, 35% strand	—

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	254	0.53	0.77	33	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3I4Q · Structure of a putative inorganic pyrophosphatase from the oil-degrading bacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3I4Q · PDBe 3I4Q

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