MolNFT v1 · #66900 · protein
Crystal structure of a susd-like carbohydrate binding protein (BF0978) from bacteroides fragilis nctc 9343 at 1.35 a resolution
3I4G · Susd-like carbohydrate binding protein BF1063: “Crystal structure of a susd-like carbohydrate binding protein (BF0978) from bacteroides fragilis nctc 9343 at…”. X-ray diffraction, 6 pockets (best druggability 0.63). MolNFT v1 #66900…
- PDB
- 3I4G
- Type
- protein
- Length
- 513 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd-like carbohydrate binding protein BF1063
- UniProt
- Q5LGM0
- Pockets
- 6 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd-like carbohydrate binding protein BF1063 | protein | 513 | 44% helix, 10% strand | Q5LGM0 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 8 copies · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 280 | 0.63 | 0.80 | 29 | EDO |
| 2 | 63 | 0.57 | 0.89 | 21 | EDO |
| 3 | 210 | 0.53 | 0.77 | 25 | EDO |
| 4 | 61 | 0.40 | 0.81 | 16 | EDO |
| 5 | 60 | 0.33 | 0.77 | 18 | empty |
Modifications
Observed in the structure: 13 modified (engineered).
Compared structures
- 3I4G · Crystal structure of a susd-like carbohydrate binding protein (BF0978) from bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LGM0
- Elsewhere: RCSB PDB 3I4G · PDBe 3I4G · UniProt Q5LGM0
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