MolNFT v1 · #6678 · protein
Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes with myristic acid revealed by high-resolution X- ray crystallography
1FK2 · Nonspecific lipid-transfer protein: “Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes with myristic acid…”. X-ray diffraction, 1 ligand (MYR), 1 pocket (best druggability 0.73). MolNFT v1…
- PDB
- 1FK2
- Type
- protein
- Length
- 93 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nonspecific lipid-transfer protein
- UniProt
- P19656
- Ligands
- MYR
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nonspecific lipid-transfer protein | protein | 93 | 61% helix, 0% strand | P19656 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 263 | 0.73 | 0.87 | 35 | MYR |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1FK2 · Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes… · the same entry in another collection · chain A against A, TM-score 1.00
- P19656 · AlphaFold monomer V2.0 prediction for non-specific lipid-transfer protein (P19656) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19656
- Elsewhere: RCSB PDB 1FK2 · PDBe 1FK2 · UniProt P19656
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