MolNFT v1 · #66763 · protein
Crystal structure of bothropstoxin-I chemically modified by P- bromophenacyl bromide (bpb) - monomeric form at a high resolution
3I03 · Phospholipase A2 homolog bothropstoxin-1: “Crystal structure of bothropstoxin-I chemically modified by P- bromophenacyl bromide (bpb) - monomeric form…”. X-ray diffraction, 1 ligand (PBP), 1 pocket (best druggability 0.54). MolNFT…
- PDB
- 3I03
- Type
- protein
- Length
- 121 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2 homolog bothropstoxin-1
- UniProt
- Q90249
- Ligands
- PBP
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2 homolog bothropstoxin-1 | protein | 121 | 48% helix, 8% strand | Q90249 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.54 | 0.81 | 21 | PBP, IPA |
Modifications
Observed in the structure: 7 disulfide, 1 covalent (disulfide, covalent ligand).
Compared structures
- 3I03 · Crystal structure of bothropstoxin-I chemically modified by p-bromophenacyl bromide (BPB)… · the same entry in another collection · chain A against A, TM-score 1.00
- Q90249 · AlphaFold monomer V2.0 prediction for basic phospholipase A2 homolog bothropstoxin-I… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q90249
- Elsewhere: RCSB PDB 3I03 · PDBe 3I03 · UniProt Q90249
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