MolNFT v1 · #66455 · protein
Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction. single type I collagen molecule, rigid body refinement
3HQV · Collagen alpha-1(I) chain: “Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction.…”. Fiber diffraction. MolNFT v1 #66455 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3HQV
- Type
- protein
- Length
- 3,134 residues
- Chains
- 3
- Method
- fiber diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen alpha-1(I) chain; Collagen alpha-2(I) chain
- UniProt
- P02454, P02466
Structure
fiber diffraction · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Collagen alpha-1(I) chain | protein | 1054 | 0% helix, 0% strand | P02454 |
| B | Collagen alpha-2(I) chain | protein | 1026 | 0% helix, 0% strand | P02466 |
Interfaces
3 interfaces between chains.
- B–C · 16560 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 16296 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 16216 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 312 modified (hydroxylation).
Compared structures
- 3HQV · Low resolution, molecular envelope structure of type I collagen in situ determined by… · the same entry in another collection · chain B against B, TM-score 1.00
- P02466 · AlphaFold monomer V2.0 prediction for collagen alpha-2(I) chain (P02466) · a predicted model of the same protein · chain B against A, TM-score 0.04
- P02454 · AlphaFold monomer V2.0 prediction for collagen alpha-1(I) chain (P02454) · a predicted model of the same protein · chain C against A, TM-score 0.04
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02454
- Every structure of UniProt P02466
- Elsewhere: RCSB PDB 3HQV · PDBe 3HQV · UniProt P02454 · UniProt P02466
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